PPDB

The Plant Proteome Database

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AT1G16340.1   Aldolase superfamily protein

Lab Annot. ATKDSA2/ATKSDA; 3-deoxy-8-phosphooctulonate synthase
Mapman: 3.5 minor CHO metabolism.others
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G16340.2 11Arabidopsis thaliana02911001009 (4)S
AT1G16340.3 11Arabidopsis thaliana02911001009 (4)S
AT1G16340.4 11Arabidopsis thaliana029399998 (3)S
Os12g10784.1 7Oryza sativa0291849225 (25)_
Os12g10784.2 7Oryza sativa0291849225 (25)_
Os12g10784.3 7Oryza sativa4E-16825786920 (0)_
GRMZM2G168510_P02 3.21Zea mays6E-180284859445 (39)_
Zm00001eb138330_P001 agpv5Zea mays6E-18028485940 (0)_
Zm00001eb138330_P002 agpv5Zea mays6E-18028485940 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DAHP_synth_1(1)
TargetP: Secreted (Class 4 C0.043; M0.044; S0.636; _0.307)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 291 aa (-cTP 227)
Molecular Weight 31.68 kDA(-cTP )
PI 5.92(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help