PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G16300.1   glyceraldehyde-3-phosphate dehydrogenase of plastid 2

Lab Annot. glyceraldehyde-3-phosphate dehydrogenase-Cp-2 (GapCp-2)
Mapman: 4.9 glycolysis.glyceraldehyde 3-phosphate dehydrogenase
Curated Location plastid stroma (Pubmed: 23198870 19675149 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G79530.1 11Arabidopsis thaliana0422869159 (34)C
AT3G04120.1 11Arabidopsis thaliana3E-17733271841360 (1026)_
AT1G13440.1 11Arabidopsis thaliana2E-17633271831536 (1177)_
Os02g07490.1 7Oryza sativa0379829022 (22)C
Os06g45590.1 7Oryza sativa036085920 (0)C
Os08g03290.1 7Oryza sativa1E-179333728472 (72)_
Zm00001eb207270_P001 agpv5Zea mays035782910 (0)C
Zm00001eb207270_P003 agpv5Zea mays036181900 (0)C
v1_GRMZM2G046804_P01 4a53Zea mays03347384212 (211)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: 2-Hacid_dh_C(1) DapB_N(1) DUF5559(1) Gp_dh_C(2) Gp_dh_N(1)
TargetP: Chloroplast (Class 2 C0.860; M0.127; S0.014; _0.015)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 420 aa (-cTP 354) (-lTP 343)
Molecular Weight 44.85 kDA(-cTP 37.94)(-lTP 36.89)
PI 8.73(-cTP 6.37)(-lTP 6.618)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
94Detail       root [B. rapa] plastid stroma 
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
1635Detail       leaf [A. thaliana] Stroma stromaclpt1-2
2173Detail       leaf [A. thaliana] stroma Clp gst clpF against clpF stroma
2247Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2271Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

19995728(proplastid (Brassica napus))
18931141(peroxisomes- high&low purity (cell culture))
19546170(mature pollen grains)
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help