PPDB

The Plant Proteome Database

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AT1G16180.1   Serinc-domain containing serine and sphingolipid biosynthesis protein

Lab Annot. Serinc-domain containing serine and sphingolipid biosynthesis protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G16180.2 11Arabidopsis thaliana04121001000 (0)S
AT3G06170.1 11Arabidopsis thaliana041064790 (0)S
AT3G24460.1 11Arabidopsis thaliana9E-5738331490 (0)_
Os02g54990.2 7Oryza sativa039577880 (0)S
Os03g34300.1 7Oryza sativa041663790 (0)S
Os03g34300.2 7Oryza sativa6E-17641258730 (0)S
Zm00001eb043310_P003 agpv5Zea mays041665800 (0)S
v1_GRMZM2G024145_P01 4a53Zea mays041665800 (0)S
v1_GRMZM2G024145_P02 4a53Zea mays041665800 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF2070(1) DUF2615(3) Ndc1_Nup(2) Serinc(1)
TargetP: Secreted (Class 4 C0.378; M0.070; S0.606; _0.049)
Predotar:
Subcel. Location:
TM-HMM prediction: 10 TMs
Aramemnon: 10 TMs
TAT position:
Length 412 aa (-cTP 402)
Molecular Weight 45.95 kDA(-cTP )
PI 6.25(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

21768351(Leaf-Phosphoproteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))
21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help