PPDB

 The Plant Proteome Database

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AT1G15390.1   peptide deformylase 1A
Lab Annot. peptide deformylase 1A (PDF1A) (dual targeted mito & chloro)
Mapman: 29.4 protein.postranslational modification
Curated Location mitochondria (Pubmed: 23198870 11060042 )
plastid (Pubmed: 23198870 11060042 )

TAIR curated location: mitochondrion & cell wall (sensu Magnoliophyta)11060042,16287169
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G14660.1 11Arabidopsis thaliana8E-231713553187 (114)C
AT5G14660.2 11Arabidopsis thaliana8E-231713553187 (114)C
AT5G14660.3 11Arabidopsis thaliana8E-2317135530 (0)C
Os01g37510.1 7Oryza sativa3E-95187718422 (22)C
Os01g45070.2 7Oryza sativa3E-2016333520 (0)M
Os01g45070.1 7Oryza sativa3E-2016331530 (0)M
GRMZM2G018771_P02 3.21Zea mays3E-95187708429 (29)M
Zm00001eb329240_P001 agpv5Zea mays3E-9518770840 (0)M
v1_GRMZM2G018771_P02 4a53Zea mays3E-95187708431 (31)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Pep_deformylase(1)
TargetP: Chloroplast (Class 4 C0.509; M0.279; S0.004; _0.178)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 269 aa (-cTP 209) (-lTP 141)
Molecular Weight 30.00 kDA(-cTP 23.40)(-lTP 16.09)
PI 8.60(-cTP 6.16)(-lTP 5.965)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
303Detail       leaf [A. thaliana] chloroplast stromawild-type
326Detail       leaf [A. thaliana] chloroplast stromawild-type
339Detail       leaf [A. thaliana] chloroplast stromawild-type
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
351Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
420Detail       leaf [A. thaliana] chloroplast stromaclpR1-stop (EMS)
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
870Detail       leaf [A. thaliana] chloroplast stromawild-type
871Detail       leaf [A. thaliana] chloroplast stromawild-type
873Detail       leaf [A. thaliana] chloroplast stromawild-type
874Detail       leaf [A. thaliana] chloroplast stromawild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1460Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 3)
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1485Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1944Detail       leaf [A. thaliana] stroma UVR stromaUVR
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1949Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2000Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2113Detail       leaf [A. thaliana] Stroma stromawt
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

 18385124(mitochondria - leaf and suspension cell)
18431481(chloroplast)
18385124(mitochondria)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19995723(chloroplast reference proteome)
21173025(root proteome)
21472856(mitochondrial-2DEgels-uncurated)
21472856(mitochondria-LC-MS/MS-uncurated)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)

Comparative Proteomics Data

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