PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G15010.1   mediator of RNA polymerase II transcription subunit

Lab Annot.
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G01300.1 11Arabidopsis thaliana9E-6114963710 (0)C
Os01g03130.1 7Oryza sativa3E-249244610 (0)C
v1_GRMZM2G390236_P01 4a53Zea mays3E-2911643600 (0)C
Zm00001eb125830_P001 agpv5Zea mays3E-2911643600 (0)C
GRMZM2G390236_P01 3.21Zea mays3E-2911643600 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM:
TargetP: Chloroplast (Class 5 C0.495; M0.462; S0.018; _0.100)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 142 aa (-cTP 107)
Molecular Weight 16.46 kDA(-cTP 12.44)
PI 9.33(-cTP 7.04)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1114Detail        [A. thaliana] RARE1 co-IP rare-1

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help