PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G14420.1 Pectate lyase family protein

Lab Annot.

pectate lyase
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G02720.1 11 Arabidopsis thaliana 0 455 73 85 0 (0) S
AT3G01270.1 11 Arabidopsis thaliana 3E-175 470 53 68 0 (0) S
AT5G15110.1 11 Arabidopsis thaliana 2E-172 470 51 67 0 (0) S
Os02g12300.1 7 Oryza sativa 5E-169 451 54 66 0 (0) S
Os06g05209.1 7 Oryza sativa 7E-163 430 54 68 0 (0) S
Os06g05260.1 7 Oryza sativa 3E-160 431 53 69 0 (0) S
Zm00001eb205310_P001 agpv5 Zea mays 2E-168 430 56 69 0 (0) M
v1_GRMZM2G080056_P01 4a53 Zea mays 2E-168 430 56 69 9 (2) M
GRMZM2G080056_P01 3.21 Zea mays 2E-168 430 56 69 9 (9) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(1) Pec_lyase_N(1) Pectate_lyase_4(1)
TargetP:	Secreted (Class 1 C0.002; M0.133; S0.983; _0.014)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	459 aa (-cTP 436)
Molecular Weight	51.45 kDA(-cTP )
PI	9.23(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
94	Detail								root [B. rapa]	plastid stroma

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data