PPDB

The Plant Proteome Database

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AT1G13980.1   sec7 domain-containing protein

Lab Annot. GN (GNOM)
Mapman: 33.99 development.unspecified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G13980.2 11Arabidopsis thaliana014511001005 (3)_
AT5G39500.1 11Arabidopsis thaliana0142662766 (4)_
AT5G39500.2 11Arabidopsis thaliana0142662760 (0)_
Os03g46330.1 7Oryza sativa01161758614 (14)_
Os02g22090.1 7Oryza sativa01436627613 (13)M
Os04g02690.1 7Oryza sativa3E-11340849670 (0)_
Zm00001eb023450_P002 agpv5Zea mays0140862760 (0)M
GRMZM2G082916_P01 3.21Zea mays0140862763 (3)M
v1_GRMZM2G082916_P01 4a53Zea mays0140862762 (2)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF1981(3) Metallophos_2(1) Mon2_C(1) Sec7(1) Sec7_N(3)
TargetP: Cytoplasm (Class 1 C0.069; M0.099; S0.074; _0.938)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon: 3 TMs
TAT position:
Length 1451 aa (-cTP 1419)
Molecular Weight 162.62 kDA(-cTP )
PI 5.58(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
2251Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help