PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G13190.1   RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot. RNA-binding (RRM/RBD/RNP motifs) protein
Mapman: 27.4 RNA.RNA binding
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G55670.1 11Arabidopsis thaliana2E-5970832452 (0)_
AT5G55670.2 11Arabidopsis thaliana2E-3732234482 (0)_
AT2G21660.2 11Arabidopsis thaliana5E-07723856509 (362)_
Os09g29980.2 7Oryza sativa2E-388673900 (0)_
Os09g29980.1 7Oryza sativa2E-388673900 (0)_
Os08g38240.1 7Oryza sativa1E-368869850 (0)_
Zm00001eb199300_P003 agpv5Zea mays7E-388673880 (0)_
Zm00001eb199300_P002 agpv5Zea mays7E-388673880 (0)_
v1_GRMZM2G131957_P01 4a53Zea mays7E-388673880 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: RRM_1(1)
TargetP: Cytoplasm (Class 1 C0.105; M0.090; S0.080; _0.909)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 573 aa (-cTP 487)
Molecular Weight 61.40 kDA(-cTP )
PI 5.73(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

19376835(leaf phosphoproteins)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help