PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G13020.1   eukaryotic initiation factor 4B2

Lab Annot. eukaryotic initiation factor 4B2
Mapman: 29.2.3 protein.synthesis.initiation
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G26400.1 11Arabidopsis thaliana056868751 (1)_
AT4G38710.1 11Arabidopsis thaliana3E-20348374523 (2)_
AT4G38710.2 11Arabidopsis thaliana4E-20348374523 (2)_
Os02g38220.1 7Oryza sativa6E-88545425515 (15)_
Os04g40400.1 7Oryza sativa1E-7860240544 (4)_
Os02g24330.1 7Oryza sativa3E-16434283822 (22)_
v1_GRMZM2G139614_P01 4a53Zea mays6E-9059639520 (0)_
Zm00001eb246120_P001 agpv5Zea mays6E-9059639520 (0)_
GRMZM2G139614_P01 3.21Zea mays6E-9059639520 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: eIF-4B(1) SpoOE-like(1)
TargetP: Cytoplasm (Class 2 C0.108; M0.072; S0.026; _0.887)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 549 aa (-cTP 464)
Molecular Weight 59.32 kDA(-cTP )
PI 8.69(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1427Detail        [A. thaliana] total leaf tissue 1.11 wild-type
1428Detail        [A. thaliana] total leaf tissue 1.11 Prep1_Prep2_t1_t2
1494Detail       leaf [A. thaliana]  
1875Detail       Total leaf [A. thaliana] total soluble wild-type
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

15815986(Silique)
19200160(flower-stage 12)
19546170(mature pollen grains)
17216043(leaf)
19376835(leaf phosphoproteins)
20706207(contaminants cell cycle interactome (cell culture))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help