PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G12890.1   Integrase-type DNA-binding superfamily protein

Lab Annot.
Mapman: 27.3.3 RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G13910.1 11Arabidopsis thaliana1E-298065810 (0)_
AT5G18560.1 11Arabidopsis thaliana5E-297367802 (2)C
AT1G28160.1 11Arabidopsis thaliana2E-286576860 (0)_
Os02g32040.1 7Oryza sativa1E-288066760 (0)_
Os04g32790.1 7Oryza sativa1E-277865760 (0)C
Os07g47330.1 7Oryza sativa3E-266374850 (0)C
GRMZM2G023708_P01 3.21Zea mays5E-2917837560 (0)C
Zm00001eb421530_P001 agpv5Zea mays5E-2917837560 (0)C
v1_GRMZM2G023708_P01 4a53Zea mays5E-2917837560 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: AP2(1) SAM_1(1)
TargetP: Cytoplasm (Class 4 C0.045; M0.429; S0.021; _0.766)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 219 aa (-cTP 216)
Molecular Weight 25.01 kDA(-cTP )
PI 5.45(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help