PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G12870.1   F-box and associated interaction domains-containing protein

Lab Annot. F-box and associated interaction domains-containing protein
Mapman: 29.5.11.4.3.2 protein.degradation.ubiquitin.E3.SCF.FBOX
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G12855.1 11Arabidopsis thaliana7E-16837765760 (0)C
AT1G13200.1 11Arabidopsis thaliana1E-14540955690 (0)C
AT1G11270.2 11Arabidopsis thaliana2E-4831936510 (0)_
Os08g29400.2 7Oryza sativa1E-1428125410 (0)_
Os08g29400.1 7Oryza sativa2E-1428125410 (0)_
Os02g35560.1 7Oryza sativa3E-1334222400 (0)C
GRMZM2G047777_P02 3.21Zea mays2E-1032124390 (0)_
v1_GRMZM2G047777_P02 4a53Zea mays2E-1032124390 (0)_
GRMZM2G047777_P01 3.21Zea mays2E-1032124390 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: F-box(2) F-box-like(2) FBA_1(2) Kelch_1(2)
TargetP: Chloroplast (Class 5 C0.697; M0.052; S0.039; _0.618)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 416 aa (-cTP 404) (-lTP 286)
Molecular Weight 48.41 kDA(-cTP 47.04)(-lTP 33.26)
PI 8.90(-cTP 9.03)(-lTP 8.397)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

17151019(vacuole - suspension cell)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help