PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G12860.1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Lab Annot.
Mapman: 27.3.6 RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G12860.2 11Arabidopsis thaliana04231001000 (0)_
AT1G12860.3 11Arabidopsis thaliana029898990 (0)_
AT3G26744.1 11Arabidopsis thaliana8E-16849260680 (0)_
Os11g32100.1 7Oryza sativa2E-10031854650 (0)_
Os01g70310.2 7Oryza sativa3E-9518876850 (0)_
Os01g70310.1 7Oryza sativa3E-9518876850 (0)_
Zm00001eb170530_P001 agpv5Zea mays9E-10131957680 (0)_
GRMZM2G033356_P01 3.21Zea mays9E-10131957680 (0)_
v1_GRMZM2G033356_P01 4a53Zea mays9E-10131957680 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Cathelicidins(2) HLH(1)
TargetP: Cytoplasm (Class 1 C0.092; M0.082; S0.026; _0.925)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 450 aa (-cTP 379)
Molecular Weight 49.80 kDA(-cTP )
PI 5.85(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help