PPDB

PPDB	The Plant Proteome Database

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AT1G12770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

Lab Annot.

DExD box RNA helicase (RH47) (EMB1586; globular stage)
Mapman: 27.5* RNA.DEAD/DEAH BOX helicase

Curated Location

plastid nucleoid (Pubmed: 23198870 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G12770.2 11 Arabidopsis thaliana 0 551 100 100 0 (0) M
AT3G19760.1 11 Arabidopsis thaliana 5E-47 416 26 47 152 (66) _
AT5G60990.1 11 Arabidopsis thaliana 1E-46 422 28 49 1 (1) _
Os03g12000.1 7 Oryza sativa 0 562 62 74 18 (18) M
Os02g42406.1 7 Oryza sativa 0 560 60 74 12 (12) M
Os06g48750.1 7 Oryza sativa 5E-47 418 27 48 79 (79) _
Zm00001eb248240_P001 agpv5 Zea mays 0 560 60 74 0 (0) M
AC198169.4_FGP004 3.21 Zea mays 0 560 58 71 64 (64) _
v1_AC198169.4_FGP004 4a53 Zea mays 0 560 58 71 49 (49) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CMS1(1) DEAD(1) Helicase_C(1) ResIII(1)
TargetP:	Mitochondria (Class 5 C0.099; M0.351; S0.272; _0.043)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	551 aa (-cTP 525)
Molecular Weight	60.72 kDA(-cTP )
PI	9.30(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
542	Detail								leaf [A. thaliana]	stroma (FPLC) >500 kDa (HMB)	wild-type
543	Detail								leaf [A. thaliana]	stroma (FPLC) >600 kDa (HMA)	wild-type
1175	Detail								leaf [A. thaliana]	co-IP RH3 stroma	wild-type
1178	Detail								leaf [A. thaliana]	co-IP RH3 stroma	clpr2-1
1179	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	clpr2-1
1196	Detail								leaf [A. thaliana]	co-IP RH3 stroma	clpr2-1
1197	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	clpr2-1
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1403	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1482	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 1)
1484	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 2)
1486	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 3)
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
2287	Detail								[A. thaliana]		Clp C1 WT
2290	Detail								[A. thaliana]		Clp C1 TRAP
2299	Detail								[A. thaliana]		Clp C1 TRAP
2300	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
21515685(GreenCut2)

Comparative Proteomics Data