PPDB

The Plant Proteome Database

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AT1G12470.1   zinc ion binding protein

Lab Annot. Pep3/Vps18/deep orange protein
Mapman: 29.3.4.3 protein.targeting.secretory pathway.vacuole
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os08g08060.1 7Oryza sativa0980708311 (11)_
Zm00001eb412950_P003 agpv5Zea mays097970830 (0)_
Zm00001eb412950_P002 agpv5Zea mays066570830 (0)_
Zm00001eb412950_P004 agpv5Zea mays052671830 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Clathrin(2) Nup54_57_C(1) Occludin_ELL(1) Pep3_Vps18(1) Vps39_2(1) zf-ANAPC11(1)
TargetP: Cytoplasm (Class 3 C0.050; M0.258; S0.097; _0.686)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 988 aa (-cTP 963)
Molecular Weight 112.32 kDA(-cTP )
PI 5.19(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
2274Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
19114538(guard cells Arabidopsis leaf)

Comparative Proteomics Data


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