PPDB

PPDB	The Plant Proteome Database

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AT1G12470.1 zinc ion binding protein

Lab Annot.

Pep3/Vps18/deep orange protein
Mapman: 29.3.4.3 protein.targeting.secretory pathway.vacuole

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
Os08g08060.1 7 Oryza sativa 0 980 70 83 11 (11) _
Zm00001eb412950_P003 agpv5 Zea mays 0 979 70 83 0 (0) _
Zm00001eb412950_P002 agpv5 Zea mays 0 665 70 83 0 (0) _
Zm00001eb412950_P004 agpv5 Zea mays 0 526 71 83 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Clathrin(2) Nup54_57_C(1) Occludin_ELL(1) Pep3_Vps18(1) Vps39_2(1) zf-ANAPC11(1)
TargetP:	Cytoplasm (Class 3 C0.050; M0.258; S0.097; _0.686)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	988 aa (-cTP 963)
Molecular Weight	112.32 kDA(-cTP )
PI	5.19(-cTP )

Experimental Evidence

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View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1440	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 2)
1444	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
2274	Detail								seedlings [A. thaliana]	total tissue	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
19114538(guard cells Arabidopsis leaf)

Comparative Proteomics Data