PPDB

 The Plant Proteome Database

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AT1G12310.1   Calcium-binding EF-hand family protein
Lab Annot. calmodulin
Mapman: 30.3 signalling.calcium
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G62820.1 11Arabidopsis thaliana6E-101148949828 (20)_
AT3G56800.1 11Arabidopsis thaliana9E-471475070208 (140)_
AT2G41110.1 11Arabidopsis thaliana9E-471475070208 (140)_
Os08g02420.1 7Oryza sativa1E-79148748727 (27)_
Os07g48780.1 7Oryza sativa7E-46147487040 (40)_
Os03g20370.1 7Oryza sativa7E-46147487040 (40)_
GRMZM2G391364_P01 3.21Zea mays1E-79148758739 (39)_
v1_GRMZM2G391364_P01 4a53Zea mays1E-79148758740 (39)_
Zm00001eb260970_P001 agpv5Zea mays1E-7914875870 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Caleosin(1) DnaA_N(2) DUF4497(2) EF-hand_1(3) EF-hand_11(1) EF-hand_4(2) EF-hand
TargetP: Cytoplasm (Class 2 C0.102; M0.089; S0.063; _0.887)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 148 aa (-cTP 93)
Molecular Weight 16.52 kDA(-cTP )
PI 4.78(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
26Detail       leaf [A. thaliana] plastid thylakoid membranewild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1125Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1596Detail        [A. thaliana]  
2003Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2004Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2005Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2007Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2021Detail       leaf [A. thaliana] total leaf tissue  
2028Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2316Detail       leaf [A. thaliana] PG plastoglobule 
2319Detail       leaf [A. thaliana] PG plastoglobule 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 14617066(Nuclear proteome)
15815986(Silique)
17644812(plasma membrane - suspension cells)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
21325567(root-proteome (wt & det3))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data

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