PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G12090.1   extensin-like protein

Lab Annot. ELP (EXTENSIN-LIKE PROTEIN); lipid binding
Mapman: 26.21 misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G62510.1 11Arabidopsis thaliana1E-458584960 (0)S
AT4G12520.1 11Arabidopsis thaliana6E-4513560710 (0)S
AT4G12510.1 11Arabidopsis thaliana6E-4513560710 (0)S
Os03g01320.1 7Oryza sativa6E-408477900 (0)S
Os04g46810.1 7Oryza sativa9E-4013559740 (0)S
Os04g46820.1 7Oryza sativa1E-3913659740 (0)S
Zm00001eb000440_P001 agpv5Zea mays2E-388472880 (0)S
v1_GRMZM2G379898_P02 4a53Zea mays2E-388472880 (0)S
GRMZM2G379898_P02 3.21Zea mays2E-388472880 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Hydrophob_seed(2) NADH_4Fe-4S(1) Tryp_alpha_amyl(1)
TargetP: Secreted (Class 2 C0.202; M0.003; S0.893; _0.004)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 137 aa (-cTP 52)
Molecular Weight 13.91 kDA(-cTP )
PI 8.48(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help