PPDB

PPDB	The Plant Proteome Database

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AT1G11870.1 Seryl-tRNA synthetase

Lab Annot.

Ser-tRNA synthetase - AtSRS (OVULE ABORTION 7) (dual targeted - cTP/mTP)
Mapman: 29.1.11 protein.aa activation.serine-tRNA ligase

Curated Location

mitochondria (Pubmed: 23198870 16251277 )
plastid stroma (Pubmed: 23198870 16251277 )

TAIR curated location: mitochondrion & chloroplast16107332,16251277

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G11870.2 11 Arabidopsis thaliana 0 514 99 99 85 (39) M
AT1G11870.4 11 Arabidopsis thaliana 0 437 97 98 0 (0) M
AT1G11870.5 11 Arabidopsis thaliana 0 429 98 98 0 (0) M
Os11g39670.1 7 Oryza sativa 0 445 76 87 26 (26) M
Os11g39670.2 7 Oryza sativa 0 382 77 88 14 (14) _
Os01g37837.1 7 Oryza sativa 3E-85 428 34 59 21 (21) _
Zm00001eb166980_P001 agpv5 Zea mays 0 399 78 88 0 (0) C
Zm00001eb166980_P004 agpv5 Zea mays 0 351 78 88 0 (0) C
v1_GRMZM2G169160_P03 4a53 Zea mays 0 447 77 87 43 (43) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CCDC-167(1) CLZ(2) DUF244(1) DUF3490(1) DUF724(1) FapA(1) Seryl_tRNA_N(1) tRNA-s
TargetP:	Mitochondria (Class 3 C0.081; M0.559; S0.037; _0.016)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	512 aa (-cTP 464)
Molecular Weight	57.18 kDA(-cTP )
PI	6.49(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
326	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
544	Detail								leaf [A. thaliana]	stroma (FPLC) <600 kDa (LMA)	wild-type
873	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1202	Detail								leaf [A. thaliana]	total leaf tissue	clpp3 null
1207	Detail								leaf [A. thaliana]	total leaf tissue	clpp3 null
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1408	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1455	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 1)
1456	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 2)
1458	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 1)
1481	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 1)
1482	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 1)
1483	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 2)
1484	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 2)
1485	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 3)
1486	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 3)
1870	Detail								Total leaf [A. thaliana]	Stroma	wild-type
1941	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1942	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1943	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1945	Detail								leaf [A. thaliana]	stroma UVR stroma	UVR
1946	Detail								leaf [A. thaliana]	stroma UVR stroma	wild-type
1947	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
2112	Detail								leaf [A. thaliana]	Stroma stroma	wt
2113	Detail								leaf [A. thaliana]	Stroma stroma	wt
2114	Detail								leaf [A. thaliana]	Stroma stroma	wt
2115	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2182	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2183	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2184	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2185	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2316	Detail								leaf [A. thaliana]	PG plastoglobule

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
17216043(leaf)
20423899(chloroplast)
19995723(chloroplast reference proteome)
21173025(root proteome)

Comparative Proteomics Data