PPDB

 The Plant Proteome Database

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AT1G11650.2   RNA-binding (RRM/RBD/RNP motifs) family protein
Lab Annot. ATRBP45B; RNA binding
Mapman: 27.3.99 RNA.regulation of transcription.unclassified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G11650.1 11Arabidopsis thaliana0306100100100 (48)_
AT5G54900.1 11Arabidopsis thaliana9E-14132563768 (3)M
AT4G27000.1 11Arabidopsis thaliana2E-137314637714 (11)_
Os08g09100.1 7Oryza sativa1E-140372607214 (14)_
Os03g37270.1 7Oryza sativa1E-136346627522 (22)_
Os03g37270.2 6Oryza sativa2E-136346627511 (11)_
GRMZM2G426591_P01 3.21Zea mays7E-141333637543 (31)_
Zm00001eb171480_P005 agpv5Zea mays7E-14133363750 (0)_
v1_GRMZM2G426591_P01 4a53Zea mays7E-141333637534 (34)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Nup35_RRM_2(2) RRM_1(3) RRM_3(1) RRM_5(3) RRM_7(3) RRM_occluded(2) SET_assoc(3)
TargetP: Cytoplasm (Class 5 C0.204; M0.392; S0.020; _0.487)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 405 aa (-cTP 359)
Molecular Weight 44.11 kDA(-cTP )
PI 5.56(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1932Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2215Detail       leaf [A. thaliana] total leaf tissue Clp P5 trap st
2246Detail       seedlings [A. thaliana] total tissue gfs9
2249Detail       seedlings [A. thaliana] total tissue gfs9
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2286Detail        [A. thaliana] Clp C1 WT
2287Detail        [A. thaliana] Clp C1 WT
2289Detail        [A. thaliana] Clp C1 TRAP
2290Detail        [A. thaliana] Clp C1 TRAP
2297Detail        [A. thaliana] Clp C1 WT
2300Detail        [A. thaliana] Clp C1 TRAP
2303Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 17828791(total leaf)
19200160(flower-stage 12)
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
19672695(oligo(dT) mRNA-binding proteins (cell culture))
20166762(guard cells (Arabidopsis))
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data

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