PPDB

PPDB	The Plant Proteome Database

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AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein

Lab Annot.

CRR22 - DYW-PPR protein - editing ndhB, ndhD, rpoB
Mapman: 27.1.5* RNA.processing.editing

Curated Location

plastid (Pubmed: 23198870 19182104 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G57430.1 11 Arabidopsis thaliana 0 801 40 60 0 (0) C
AT4G18750.1 11 Arabidopsis thaliana 0 763 37 60 0 (0) C
AT4G33990.1 11 Arabidopsis thaliana 0 771 37 60 0 (0) M
Os06g02200.1 7 Oryza sativa 0 708 57 74 0 (0) C
Os01g74600.1 7 Oryza sativa 0 745 41 60 0 (0) C
Os04g14130.3 7 Oryza sativa 0 860 36 53 0 (0) _
GRMZM2G103078_P01 3.21 Zea mays 0 680 56 74 1 (1) M
v1_GRMZM2G103078_P01 4a53 Zea mays 0 680 56 74 1 (1) M
Zm00001eb268800_P004 agpv5 Zea mays 0 680 56 74 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AEP1(1) Clathrin(3) DUF697(2) DYW_deaminase(1) PPR(12) PPR_1(13) PPR_2(12) PPR_3
TargetP:	Chloroplast (Class 4 C0.661; M0.263; S0.017; _0.129)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	809 aa (-cTP 763)
Molecular Weight	90.87 kDA(-cTP 85.54)
PI	8.12(-cTP 7.99)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1482	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data