PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G10960.1 ferredoxin 1

Lab Annot.

Fd1-leaf
Mapman: 1.1.5.2 PS.lightreaction.other electron carrier (ox/red).ferredoxin

Curated Location

thylakoid-peripheral-stromal-side (Pubmed: 23198870 18431481 ) (supported by in-house exprements)

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G60950.1 11 Arabidopsis thaliana 1E-92 148 87 92 71 (57) C
AT2G27510.1 11 Arabidopsis thaliana 3E-48 152 54 71 0 (0) C
AT5G10000.1 11 Arabidopsis thaliana 3E-40 118 52 72 0 (0) C
Os08g01380.1 7 Oryza sativa 9E-55 148 58 71 82 (82) M
Os03g61960.1 7 Oryza sativa 2E-49 150 55 70 9 (9) C
Os03g61960.2 7 Oryza sativa 2E-49 150 55 70 5 (5) C
GRMZM2G122337_P01 3.21 Zea mays 4E-54 133 63 77 48 (48) C
v1_GRMZM2G122337_P01 4a53 Zea mays 4E-54 133 63 77 57 (57) C
Zm00001eb260140_P002 agpv5 Zea mays 4E-54 133 63 77 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Fer2(1) Fer2_4(1)
TargetP:	Chloroplast (Class 2 C0.932; M0.221; S0.028; _0.004)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	148 aa (-cTP 79)
Molecular Weight	15.90 kDA(-cTP 8.46)
PI	4.44(-cTP 3.78)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
195_194	Detail								leaf [A. thaliana]	chloroplast stroma	ffc1-2
351	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
1409	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.1	wild-type
1411	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.1	clpr2-1
1412	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.2	clpr2-1
1416	Detail								leaf [A. thaliana]	total leaf tissue 1.14 rep 1.2	clpr2-1
1424	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 1)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1870	Detail								Total leaf [A. thaliana]	Stroma	wild-type
1871	Detail								Total leaf [A. thaliana]	Stroma	wild-type
1875	Detail								Total leaf [A. thaliana]	total soluble	wild-type
1876	Detail								Total leaf [A. thaliana]	total soluble	wild-type
2031	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and icp55c-3
2032	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and icp55c-3
2033	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and icp55c-3
2034	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and icp55c-3
2035	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and icp55c-3
2037	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and icp55c-3
2038	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and icp55c-3
2039	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and icp55c-3
2041	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and icp55c-3
2042	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and icp55c-3
2045	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2046	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2051	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2052	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2053	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2054	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2059	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and cgep
2060	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and cgep
2062	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and cgep
2065	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2066	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2067	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2068	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2069	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2070	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2071	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2072	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2076	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2077	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2078	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2079	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2081	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2082	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2083	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2084	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2085	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2087	Detail								Total leaf [A. thaliana]	total soluble	wild-type
2088	Detail								Total leaf [A. thaliana]	total soluble	wild-type
2141	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2142	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2143	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2144	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2145	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2146	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2147	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2148	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2149	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2150	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2151	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2152	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2182	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt

* For details about the exprimental sources click here.

Published Proteomics Data

18633119(stroma)
18431481(chloroplast)
19995723(chloroplast reference proteome)

Comparative Proteomics Data