PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G10950.1   transmembrane nine 1

Lab Annot. endomembrane protein 70
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G37310.1 11Arabidopsis thaliana3E-15660140600 (0)S
AT5G37310.2 11Arabidopsis thaliana3E-15660140600 (0)S
AT2G01970.1 11Arabidopsis thaliana5E-156578416016 (15)M
Os11g07910.1 7Oryza sativa056686932 (2)S
Os12g07670.1 7Oryza sativa056984922 (2)M
Os02g34690.1 7Oryza sativa057883920 (0)S
v1_GRMZM2G087212_P01 4a53Zea mays056884926 (5)S
GRMZM2G087212_P01 3.21Zea mays056884927 (7)S
Zm00001eb243530_P001 agpv5Zea mays058082910 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: EMP70(1) ETRAMP(2) EVC2_like(2) OppC_N(3)
TargetP: Secreted (Class 1 C0.032; M0.012; S0.979; _0.034)
Predotar:
Subcel. Location:
TM-HMM prediction: 10 TMs
Aramemnon:
TAT position:
Length 589 aa (-cTP 586)
Molecular Weight 66.89 kDA(-cTP )
PI 7.55(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1612Detail       Natural Senescence leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1613Detail       Natural Senescence leaf [A. thaliana]  
1699Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek5-1
1744Detail        [A. thaliana] Mep-6
1745Detail        [A. thaliana] Col-0
2245Detail       seedlings [A. thaliana] total tissue wild-type
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2268Detail       seedlings [A. thaliana] total tissue wild-type
2269Detail       seedlings [A. thaliana] total tissue wild-type
2270Detail       seedlings [A. thaliana] total tissue wild-type
2271Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

16618929(Golgi)
17432890(leaf total membranes)
17660356(tonoplast (Brassica oleracea buds))
19200160(flower-stage 12)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
22430844(Golgi-cell-culture)
21988472(vacuole (unfiltered data))
21433285(Crude microsomes cell_cultures)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help