PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G09910.1   Rhamnogalacturonate lyase family protein

Lab Annot.
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G09910.3 11Arabidopsis thaliana06321001000 (0)_
AT1G09910.2 11Arabidopsis thaliana06321001000 (0)_
AT1G09890.4 11Arabidopsis thaliana063064770 (0)_
Os08g44020.3 7Oryza sativa063162780 (0)_
Os08g44020.1 7Oryza sativa063162780 (0)_
Os08g44020.2 7Oryza sativa063162780 (0)_
v1_GRMZM2G154124_P01 4a53Zea mays063262770 (0)_
GRMZM2G154124_P01 3.21Zea mays063262770 (0)_
Zm00001eb039820_P001 agpv5Zea mays063262770 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CarboxypepD_reg(1) CBM-like(2) fn3_3(1) Rhamnogal_lyase(1)
TargetP: Cytoplasm (Class 5 C0.046; M0.500; S0.034; _0.648)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 675 aa (-cTP 649)
Molecular Weight 77.09 kDA(-cTP )
PI 6.28(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help