PPDB

 The Plant Proteome Database

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AT1G09900.1   Pentatricopeptide repeat (PPR-like) superfamily protein
Lab Annot.
Mapman: 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G04760.1 11Arabidopsis thaliana3E-151489446438 (33)C
AT3G04760.2 11Arabidopsis thaliana3E-12244040620 (0)C
AT1G79080.1 11Arabidopsis thaliana2E-10548335603 (3)C
Os02g35750.1 7Oryza sativa048356770 (0)C
Os02g35750.2 7Oryza sativa048356770 (0)C
Os02g35750.3 7Oryza sativa4E-16333162850 (0)_
v1_GRMZM2G127963_P01 4a53Zea mays049953758 (8)C
Zm00001eb244420_P001 agpv5Zea mays049953750 (0)C
GRMZM2G127963_P01 3.21Zea mays049953759 (9)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AEP1(2) ANAPC3(3) Arabino_trans_C(1) ATP13(5) Clathrin(6) Cytomega_UL20A(1) DUF3
TargetP: Cytoplasm (Class 4 C0.398; M0.025; S0.012; _0.621)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 598 aa (-cTP 540)
Molecular Weight 66.26 kDA(-cTP )
PI 8.52(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1635Detail       leaf [A. thaliana] Stroma stromaclpt1-2
1636Detail       leaf [A. thaliana] Stroma stromaclpt1-2

* For details about the exprimental sources click here.

Published Proteomics Data

 17432890(leaf total membranes)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help