PPDB

PPDB	The Plant Proteome Database

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AT1G09890.1 Rhamnogalacturonate lyase family protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G09890.4 11 Arabidopsis thaliana 0 617 100 100 0 (0) _
AT1G09890.3 11 Arabidopsis thaliana 0 641 96 96 0 (0) _
AT1G09890.5 11 Arabidopsis thaliana 0 617 99 99 0 (0) _
Os08g44020.1 7 Oryza sativa 0 619 65 79 0 (0) _
Os08g44020.2 7 Oryza sativa 0 619 65 79 0 (0) _
Os08g44020.3 7 Oryza sativa 0 619 65 79 0 (0) _
Zm00001eb039820_P002 agpv5 Zea mays 0 620 66 79 0 (0) M
Zm00001eb039820_P001 agpv5 Zea mays 0 620 66 79 0 (0) M
v1_GRMZM2G154124_P01 4a53 Zea mays 0 620 66 79 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CarbopepD_reg_2(2) CarboxypepD_reg(1) CBM-like(3) DUF2012(2) fn3_3(1) Rhamnogal_
TargetP:	Cytoplasm (Class 2 C0.074; M0.088; S0.195; _0.882)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	617 aa (-cTP 610)
Molecular Weight	70.72 kDA(-cTP )
PI	5.13(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data