PPDB

The Plant Proteome Database

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AT1G09890.1   Rhamnogalacturonate lyase family protein

Lab Annot.
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G09890.4 11Arabidopsis thaliana06171001000 (0)_
AT1G09890.3 11Arabidopsis thaliana064196960 (0)_
AT1G09890.5 11Arabidopsis thaliana061799990 (0)_
Os08g44020.1 7Oryza sativa061965790 (0)_
Os08g44020.2 7Oryza sativa061965790 (0)_
Os08g44020.3 7Oryza sativa061965790 (0)_
Zm00001eb039820_P002 agpv5Zea mays062066790 (0)M
Zm00001eb039820_P001 agpv5Zea mays062066790 (0)M
v1_GRMZM2G154124_P01 4a53Zea mays062066790 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CarbopepD_reg_2(2) CarboxypepD_reg(1) CBM-like(3) DUF2012(2) fn3_3(1) Rhamnogal_
TargetP: Cytoplasm (Class 2 C0.074; M0.088; S0.195; _0.882)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 617 aa (-cTP 610)
Molecular Weight 70.72 kDA(-cTP )
PI 5.13(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


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