PPDB

PPDB	The Plant Proteome Database

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AT1G09770.1 cell division cycle 5

Lab Annot.

ATCDC5 DNA binding / transcription factor
Mapman: 27.3.26 RNA.regulation of transcription.MYB-related transcription factor family

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G02320.1 11 Arabidopsis thaliana 3E-13 107 39 55 0 (0) C
AT5G02320.2 11 Arabidopsis thaliana 3E-13 107 39 55 0 (0) C
AT5G02320.3 11 Arabidopsis thaliana 3E-13 107 39 55 0 (0) _
Os04g28090.1 7 Oryza sativa 0 819 72 85 17 (17) _
Os07g43420.1 7 Oryza sativa 3E-13 95 35 55 0 (0) _
Os01g62410.1 7 Oryza sativa 5E-12 107 38 54 0 (0) C
Zm00001eb142770_P002 agpv5 Zea mays 0 827 72 84 0 (0) _
AC203535.4_FGP001 3.21 Zea mays 0 827 72 84 7 (7) _
v1_AC203535.4_FGP001 4a53 Zea mays 0 827 72 84 28 (28) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Myb_Cef(3) Myb_DNA-bind_6(3) Myb_DNA-binding(2) Rap1_C(2)
TargetP:	Cytoplasm (Class 2 C0.031; M0.242; S0.062; _0.929)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	844 aa (-cTP 805)
Molecular Weight	95.77 kDA(-cTP )
PI	6.37(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1421	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1422	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1425	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 2)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1439	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 1)
1440	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 2)
1507	Detail								[A. thaliana]		wild-type
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
2321	Detail								leaf [A. thaliana]
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
18463617(suspension cells-phosphorylated proteins)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
19376835(leaf phosphoproteins)
21166475(cytosolic-fractions-crude)
21173025(root proteome)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data