PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G09740.1   Adenine nucleotide alpha hydrolases-like superfamily protein
Lab Annot.
Mapman: 17.5.3 hormone metabolism.ethylene.induced-regulated-responsive-activated
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G09740.2 11Arabidopsis thaliana5E-1251711001000 (0)_
AT3G11930.1 11Arabidopsis thaliana7E-361684162157 (102)_
AT3G11930.2 11Arabidopsis thaliana8E-351653862157 (102)_
Os02g52314.1 7Oryza sativa4E-7816169800 (0)_
Os03g53900.2 7Oryza sativa3E-3516241610 (0)_
Os03g53900.1 7Oryza sativa9E-3516142600 (0)_
Zm00001eb255610_P002 agpv5Zea mays3E-7616168790 (0)_
v1_GRMZM2G018586_P01 4a53Zea mays3E-7616168799 (9)_
GRMZM2G018586_P01 3.21Zea mays3E-7616168798 (8)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Usp(1)
TargetP: Cytoplasm (Class 5 C0.222; M0.016; S0.312; _0.405)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 171 aa (-cTP 119)
Molecular Weight 18.15 kDA(-cTP )
PI 6.04(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2247Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

 19334764(plasma membrane (cell culture))
21325567(root-proteome (wt & det3))
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help