PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G09200.1   Histone superfamily protein

Lab Annot. histone H3
Mapman: 28.1.3 DNA.synthesis/chromatin structure.histone
Curated Location nucleus
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G65360.1 11Arabidopsis thaliana4E-9513610010022 (22)C
AT5G10400.1 11Arabidopsis thaliana4E-9513610010022 (22)C
AT5G10390.1 11Arabidopsis thaliana4E-9513610010022 (22)C
Os11g05730.1 7Oryza sativa4E-9513610010018 (18)C
Os06g06460.1 7Oryza sativa4E-9513610010018 (18)C
Os06g06510.1 7Oryza sativa4E-9513610010018 (18)C
Zm00001eb422190_P001 agpv5Zea mays4E-951361001000 (0)C
Zm00001eb271240_P001 agpv5Zea mays4E-951361001000 (0)C
GRMZM2G179005_P02 3.21Zea mays4E-9513610010091 (91)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CBFD_NFYB_HMF(1) CENP-S(1) CENP-T_C(1) Histone(1) PAF(1)
TargetP: Chloroplast (Class 3 C0.765; M0.333; S0.010; _0.074)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 136 aa (-cTP 83)
Molecular Weight 15.27 kDA(-cTP 9.56)
PI 11.29(-cTP 9.80)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1176Detail       leaf [A. thaliana] co-IP ClpR2 stromawild-type
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1617Detail        [A. thaliana] m48
1621Detail        [A. thaliana] m48
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2245Detail       seedlings [A. thaliana] total tissue wild-type
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2309Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

18814325(cotyledons)
19334764(plasma membrane (cell culture))
21533090(plasmodesmata-crude)
21311031(lysine-acetylated leaf)
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help