PPDB

The Plant Proteome Database

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AT1G09070.1   soybean gene regulated by cold-2

Lab Annot. soybean gene regulated by cold-2
Mapman: 29.3.4.3 protein.targeting.secretory pathway.vacuole
Curated Location
TAIR curated location: endoplasmic reticulum & protein storage vacuole16227454
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G16510.1 11Arabidopsis thaliana1E-3121338540 (0)_
AT4G15755.1 11Arabidopsis thaliana2E-2634332460 (0)_
AT3G62780.1 11Arabidopsis thaliana4E-1914136560 (0)_
Os01g70790.1 7Oryza sativa7E-2515440590 (0)_
Os01g27190.1 7Oryza sativa9E-1733231430 (0)M
Os05g30740.1 7Oryza sativa2E-1614434540 (0)_
v1_GRMZM2G425004_P01 4a53Zea mays1E-2528136490 (0)_
Zm00001eb142200_P002 agpv5Zea mays1E-2528136490 (0)_
GRMZM2G425004_P01 3.21Zea mays1E-2528136490 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: C2(1)
TargetP: Cytoplasm (Class 3 C0.079; M0.046; S0.341; _0.856)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 324 aa (-cTP 260)
Molecular Weight 34.19 kDA(-cTP )
PI 6.44(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2249Detail       seedlings [A. thaliana] total tissue gfs9
2252Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help