PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G08830.1   copper/zinc superoxide dismutase 1
Lab Annot. superoxide dismutase (Cu-Zn) (SODCC)(CSD1) (this is not the chloroplast protein)
Mapman: 21.6 redox.dismutases and catalases
Curated Location not plastid (supported by in-house exprements)

TAIR curated location: cytosol12028573
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G08830.2 11Arabidopsis thaliana4E-105152100100161 (106)_
AT2G28190.1 11Arabidopsis thaliana4E-651486775590 (470)C
AT5G18100.1 11Arabidopsis thaliana7E-6214961738 (5)_
Os07g46990.2 7Oryza sativa2E-86152828817 (17)_
Os07g46990.1 7Oryza sativa2E-86152828817 (17)_
Os03g22810.1 7Oryza sativa4E-84152808541 (41)_
v1_GRMZM2G169890_P02 4a53Zea mays8E-88152828818 (17)_
v1_GRMZM2G169890_P01 4a53Zea mays8E-88152828818 (17)_
GRMZM2G169890_P02 3.21Zea mays8E-88152828819 (18)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: aRib(1) Sod_Cu(1)
TargetP: Cytoplasm (Class 3 C0.118; M0.100; S0.203; _0.692)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 152 aa (-cTP 143)
Molecular Weight 15.10 kDA(-cTP )
PI 5.24(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
351Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
622Detail       leaf [A. thaliana] total leaf tissue wild-type
1125Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1127Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1398Detail       leaf [A. thaliana] total leaf tissue 1.14 Prep1_Prep2
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1413Detail       leaf [A. thaliana] total leaf tissue -114 rep1tR1 wild-type
1415Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.1 clpr2-1
1416Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1427Detail        [A. thaliana] total leaf tissue 1.11 wild-type
1428Detail        [A. thaliana] total leaf tissue 1.11 Prep1_Prep2_t1_t2
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1446Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 2)
1515Detail       leaf [A. thaliana] wild-type
1516Detail       leaf [A. thaliana] wild-type
1517Detail       leaf [A. thaliana] wild-type
1518Detail       leaf [A. thaliana] wild-type
1519Detail       leaf [A. thaliana] wild-type
1520Detail       leaf [A. thaliana] wild-type
1521Detail       leaf [A. thaliana] wild-type
1523Detail       leaf [A. thaliana] wild-type
1524Detail       leaf [A. thaliana] wild-type
1540Detail       leaf [A. thaliana] Thylakoids plastoglobulewild-type
1596Detail        [A. thaliana]  
1875Detail       Total leaf [A. thaliana] total soluble wild-type
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
2003Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2005Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2021Detail       leaf [A. thaliana] total leaf tissue  
2029Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2051Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2052Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2053Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2054Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2160Detail       leaf [A. thaliana] stroma Clp stromaP3-strepII 13
2161Detail       leaf [A. thaliana] stroma Clp stromaP3-strepII 31
2162Detail       leaf [A. thaliana] stroma Clp stromaP3-trap - strepII 8
2166Detail       leaf [A. thaliana] stroma Clp stromaP5 trap-strepII
2167Detail       leaf [A. thaliana] stroma Clp stromaP3 trap-strepII
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2193Detail        [A. thaliana] total soluble P3-strepII 26
2225Detail       leaf [A. thaliana] total leaf tissue Clp P3 trap
2226Detail       leaf [A. thaliana] total leaf tissue wild-type
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2286Detail        [A. thaliana] Clp C1 WT
2287Detail        [A. thaliana] Clp C1 WT
2289Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2301Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 16247729(mature Pollen)
15815986(Silique)
15815986(Leaf)
15734904(S-nitrosylated suspension cells or leaf)
18998720(SA-induced secreted proteome (cell culture))
18814325(cotyledons)
19200160(flower-stage 12)
19546170(mature pollen grains)
17216043(leaf)
19329564(peroxisomes (leaf))
18445580(leaves)
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help