PPDB

 The Plant Proteome Database

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AT1G08550.1   non-photochemical quenching 1
Lab Annot. Violaxanthin Deepoxidase (VDE)
Mapman: 16.1.4.21 secondary metabolism.isoprenoids.carotenoids.violaxanthin de-epoxidase
Curated Location thylakoid-peripheral-lumenal-side (Pubmed: 23198870 18431481 ) (supported by in-house exprements)

TAIR curated location: thylakoid lumen (sensu Viridiplantae) & photosystem II (sensu Viridiplantae)11058750,11719511
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G08550.2 11Arabidopsis thaliana0462100100175 (139)_
AT1G08550.3 11Arabidopsis thaliana04621001000 (0)_
AT2G21860.1 11Arabidopsis thaliana2E-08161204048 (19)C
Os04g31040.1 7Oryza sativa0379748910 (10)M
Os04g31040.3 7Oryza sativa0366779010 (10)S
Os01g51860.1 7Oryza sativa5E-1027120426 (6)C
Zm00001eb085840_P001 agpv5Zea mays036975890 (0)M
GRMZM2G027219_P01 3.21Zea mays036975895 (5)M
v1_GRMZM2G027219_P01 4a53Zea mays036975894 (4)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CsgA(1) DUF885(1) FAM192A_Fyv6_N(1) Lipocalin(2) VDE(1)
TargetP: Cytoplasm (Class 5 C0.522; M0.078; S0.015; _0.593)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon: 1 TMs
TAT position:
Length 462 aa (-cTP 380)
Molecular Weight 52.02 kDA(-cTP )
PI 5.18(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
343Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
351Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
352Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
355Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
622Detail       leaf [A. thaliana] total leaf tissue wild-type
875Detail       leaf [A. thaliana] chloroplast stromawild-type
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1043Detail       leaf [A. thaliana] plastid - coIP thylakoid membrane 
1125Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1126Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1127Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1331Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1413Detail       leaf [A. thaliana] total leaf tissue -114 rep1tR1 wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1516Detail       leaf [A. thaliana] wild-type
1517Detail       leaf [A. thaliana] wild-type
1518Detail       leaf [A. thaliana] wild-type
1519Detail       leaf [A. thaliana] wild-type
1520Detail       leaf [A. thaliana] wild-type
1521Detail       leaf [A. thaliana] wild-type
1522Detail       leaf [A. thaliana] wild-type
1523Detail       leaf [A. thaliana] wild-type
1524Detail       leaf [A. thaliana] wild-type
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1541Detail       leaf [A. thaliana] Thylakoids plastoglobuleM-48
1542Detail       leaf [A. thaliana] wild-type
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1582Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1621Detail        [A. thaliana] m48
1628Detail       Rosettes [A. thaliana] total leaf tissue thylakoid + envelopek1xk3
1650Detail       leaf [A. thaliana] plastoglobules plastoglobulem48
1651Detail       leaf [A. thaliana] plastoglobules plastoglobulewild-type
1745Detail        [A. thaliana] Col-0
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1870Detail       Total leaf [A. thaliana] Stroma wild-type
1936Detail       leaf [A. thaliana] chloroplast Prep1_Prep2
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
1944Detail       leaf [A. thaliana] stroma UVR stromaUVR
1945Detail       leaf [A. thaliana] stroma UVR stromaUVR
1946Detail       leaf [A. thaliana] stroma UVR stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1949Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1983Detail       leaf [A. thaliana] plastid wild-type
1984Detail       leaf [A. thaliana] plastid wild-type
1985Detail       leaf [A. thaliana] plastid wild-type
1987Detail       leaf [A. thaliana] plastid Prep1_Prep2
1988Detail       leaf [A. thaliana] plastid Prep1_Prep2
2003Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2004Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2005Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2007Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2028Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2112Detail       leaf [A. thaliana] Stroma stromawt
2115Detail       leaf [A. thaliana] Stroma stromacGep
2116Detail       leaf [A. thaliana] Stroma stromacGep
2132Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2133Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2191Detail        [A. thaliana] plastid stroma stromaP3-trap-strepII 40
2308Detail       leaf [A. thaliana] PG plastoglobule 
2310Detail       leaf [A. thaliana] PG plastoglobule 
2311Detail       leaf [A. thaliana] PG plastoglobule 
2312Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2313Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2314Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2315Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2316Detail       leaf [A. thaliana] PG plastoglobule 
2317Detail       leaf [A. thaliana] PG plastoglobule 
2318Detail       leaf [A. thaliana] PG plastoglobule 
2319Detail       leaf [A. thaliana] PG plastoglobule 
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 11719511(Thylakoid lumen proteome)
18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
19995723(chloroplast reference proteome)
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data

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