PPDB

PPDB	The Plant Proteome Database

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AT1G08540.1 RNApolymerase sigma subunit 2

Lab Annot.

SIG2 sigma factor (Sig2)
Mapman: 27.2 RNA.transcription

Curated Location

plastid stroma (Pubmed: 23198870 18431481 )

TAIR curated location: chloroplast10555304

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G36990.1 11 Arabidopsis thaliana 5E-77 359 39 59 0 (0) C
AT3G53920.1 11 Arabidopsis thaliana 6E-62 294 36 65 0 (0) C
AT5G13730.1 11 Arabidopsis thaliana 2E-54 300 36 58 1 (1) C
Os11g26160.1 7 Oryza sativa 7E-124 334 58 76 0 (0) C
Os03g16430.2 7 Oryza sativa 3E-115 340 51 71 0 (0) C
Os03g16430.1 7 Oryza sativa 7E-115 370 50 70 0 (0) M
Zm00001eb169360_P001 agpv5 Zea mays 2E-126 366 53 74 0 (0) C
v1_GRMZM2G143392_P01 4a53 Zea mays 2E-126 366 53 74 21 (21) C
GRMZM2G143392_P01 3.21 Zea mays 2E-126 366 53 74 20 (20) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	GerE(2) HTH_3(2) HTH_AsnC-type(3) Phage_terminase(2) Sigma70_r1_2(1) Sigma70_r2(
TargetP:	Chloroplast (Class 3 C0.814; M0.101; S0.012; _0.257)
Predotar:
Subcel. Location:	Lumen
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	572 aa (-cTP 533) (-lTP 477)
Molecular Weight	64.05 kDA(-cTP 59.63)(-lTP 53.53)
PI	9.49(-cTP 9.48)(-lTP 9.679)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

19995723(chloroplast reference proteome)
21173025(root proteome)

Comparative Proteomics Data