PPDB

 The Plant Proteome Database

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AT1G08130.1   DNA ligase 1
Lab Annot. DNA ligase 1 (LIG1) - 2 forms - cytosol or mitoch
Mapman: 28.2 DNA.repair
Curated Location cytosol (Pubmed: 16790030 )
mitochondria (Pubmed: 16790030 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G49250.1 11Arabidopsis thaliana068173830 (0)_
AT1G66730.1 11Arabidopsis thaliana6E-15564140610 (0)C
AT5G57160.1 11Arabidopsis thaliana3E-2240528450 (0)_
Os10g34750.1 7Oryza sativa0627718523 (23)_
Os10g34750.2 7Oryza sativa0627718523 (23)_
Os01g49180.1 7Oryza sativa1E-14269834550 (0)C
GRMZM2G071304_P01 3.21Zea mays0668698417 (17)C
Zm00001eb045200_P002 agpv5Zea mays066869840 (0)C
Zm00001eb045200_P001 agpv5Zea mays066869840 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DNA_ligase_A_C(1) DNA_ligase_A_M(1) DNA_ligase_A_N(1) DNA_ligase_OB_2(2) RNA_lig
TargetP: Chloroplast (Class 3 C0.787; M0.221; S0.003; _0.005)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon: 1 TMs
TAT position:
Length 790 aa (-cTP 726)
Molecular Weight 87.74 kDA(-cTP 80.61)
PI 8.20(-cTP 6.39)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1

* For details about the exprimental sources click here.

Published Proteomics Data

 21166475(cytosolic-fractions-crude)
20813957(SUMO proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help