PPDB

The Plant Proteome Database

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AT1G08060.1   ATP-dependent helicase family protein

Lab Annot. ATP-dependent helicase protein
Mapman: 27.3.44 RNA.regulation of transcription.Chromatin Remodeling Factors
Curated Location
TAIR curated location: nucleus10821279
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G08060.2 11Arabidopsis thaliana020011001001 (1)_
AT1G08060.3 11Arabidopsis thaliana0200299990 (0)_
AT5G44800.1 11Arabidopsis thaliana2E-2830130513 (3)_
Os06g01320.1 7Oryza sativa2E-9859936550 (0)C
Os02g02050.1 7Oryza sativa4E-8259634510 (0)C
Os07g31450.1 7Oryza sativa7E-2826532500 (0)M
Zm00001eb379660_P002 agpv5Zea mays2E-9278632490 (0)C
Zm00001eb379660_P001 agpv5Zea mays2E-9278632490 (0)C
v1_GRMZM2G472428_P02 4a53Zea mays6E-9278632490 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Ribul_P_3_epim(1) RRS1(1)
TargetP: Cytoplasm (Class 5 C0.403; M0.078; S0.001; _0.504)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 2001 aa (-cTP 1950)
Molecular Weight 218.57 kDA(-cTP )
PI 5.24(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt

* For details about the exprimental sources click here.

Published Proteomics Data

17407188(cotyledon)
22060019(phosphoproteome - N-starved seedlings)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help