PPDB

The Plant Proteome Database

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AT1G08050.1   Zinc finger (C3HC4-type RING finger) family protein

Lab Annot. Zinc finger (C3HC4-type RING finger) protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G60710.1 11Arabidopsis thaliana068451650 (0)M
AT2G38970.1 11Arabidopsis thaliana067949652 (2)M
AT3G54780.1 11Arabidopsis thaliana066547640 (0)_
Os02g56280.1 7Oryza sativa072645590 (0)_
Os02g40664.1 7Oryza sativa2E-18064447620 (0)M
Os04g42980.1 7Oryza sativa4E-18061046620 (0)_
Zm00001eb258330_P003 agpv5Zea mays062348630 (0)_
GRMZM2G178038_P02 3.21Zea mays062348630 (0)_
Zm00001eb258330_P002 agpv5Zea mays072845600 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: PHD(1) VWA(1) VWA_2(1) VWA_3(1) VWA_CoxE(1) Vwaint(1) zf-ANAPC11(1) zf-C3H2C3(1)
TargetP: Chloroplast (Class 2 C0.894; M0.034; S0.006; _0.279)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 641 aa (-cTP 578)
Molecular Weight 70.12 kDA(-cTP 63.44)
PI 5.84(-cTP 5.78)

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2300Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

17317660(Plasma Membrane proteome)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help