PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G07370.1   proliferating cellular nuclear antigen 1

Lab Annot. DNA binding / DNA polymerase processivity factor (PCNA1)
Mapman: 27.3.67 RNA.regulation of transcription.putative transcription regulator
Curated Location nucleus (Pubmed: 16771839 15610358 )

TAIR curated location: nucleolus & nucleus & cytoplasm15610358
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G29570.1 11Arabidopsis thaliana0263969838 (24)_
Os02g56130.1 7Oryza sativa4E-176260889629 (29)_
Zm00001eb258230_P001 agpv5Zea mays1E-17226385950 (0)_
v1_GRMZM2G030523_P01 4a53Zea mays1E-172263859539 (39)_
GRMZM2G030523_P01 3.21Zea mays1E-1722638595114 (40)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Hus1(2) PCNA_C(1) PCNA_N(1) Porin_OmpL1(1) Rad9(1)
TargetP: Cytoplasm (Class 4 C0.041; M0.080; S0.253; _0.595)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 263 aa (-cTP 195)
Molecular Weight 29.12 kDA(-cTP )
PI 4.60(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
622Detail       leaf [A. thaliana] total leaf tissue wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1413Detail       leaf [A. thaliana] total leaf tissue -114 rep1tR1 wild-type
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2192Detail        [A. thaliana] total soluble P3-trap-strepII 16
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
20118269(developing seeds)
19334764(plasma membrane (cell culture))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help