PPDB

PPDB	The Plant Proteome Database

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AT1G07360.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein

Lab Annot.

Mapman: 27.3.99 RNA.regulation of transcription.unclassified

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G29580.1 11 Arabidopsis thaliana 0 495 80 86 0 (0) _
AT5G07060.2 11 Arabidopsis thaliana 7E-172 392 66 74 0 (0) _
AT5G07060.1 11 Arabidopsis thaliana 2E-169 387 64 73 0 (0) _
Os06g07350.1 7 Oryza sativa 0 387 77 86 2 (2) _
Os07g18050.1 7 Oryza sativa 0 387 75 86 2 (2) _
Os09g28810.1 7 Oryza sativa 1E-11 94 39 56 6 (6) _
Zm00001eb375430_P003 agpv5 Zea mays 0 414 71 82 0 (0) _
Zm00001eb375430_P002 agpv5 Zea mays 0 414 71 82 0 (0) _
GRMZM5G831993_P02 3.21 Zea mays 0 414 71 82 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	RRM_1(1) RRM_3(1) RRM_occluded(1) Torus(1) zf-CCCH(1) zf-CCCH_2(1) zf-CCCH_3(1)
TargetP:	Cytoplasm (Class 2 C0.069; M0.275; S0.050; _0.899)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	481 aa (-cTP 408)
Molecular Weight	53.59 kDA(-cTP )
PI	7.21(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
755	Detail								[A. thaliana]

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19114538(guard cells Arabidopsis leaf)
21173025(root proteome)

Comparative Proteomics Data