PPDB

The Plant Proteome Database

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AT1G07090.1   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)

Lab Annot.
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G58500.1 11Arabidopsis thaliana1E-8415477850 (0)C
AT2G42610.2 11Arabidopsis thaliana4E-73140748897 (33)_
AT2G42610.1 11Arabidopsis thaliana4E-73140748897 (33)_
Os02g41460.1 7Oryza sativa2E-7613780920 (0)_
Os01g61310.1 7Oryza sativa3E-7513284920 (0)C
Os05g39500.1 7Oryza sativa2E-7413782890 (0)_
GRMZM2G030116_P01 3.21Zea mays9E-8313285930 (0)_
Zm00001eb286430_P001 agpv5Zea mays9E-8313285930 (0)_
v1_GRMZM2G030116_P01 4a53Zea mays9E-8313285930 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF640(1)
TargetP: Cytoplasm (Class 3 C0.412; M0.055; S0.018; _0.879)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 196 aa (-cTP 167)
Molecular Weight 21.53 kDA(-cTP )
PI 9.53(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

18436743(specific to siliques)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help