PPDB

PPDB	The Plant Proteome Database

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AT1G06960.1 RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot.

small nuclear ribonucleoprotein U2B
Mapman: 27.1.1 RNA.processing.splicing

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G06960.3 11 Arabidopsis thaliana 4E-143 194 99 100 2 (2) M
AT2G30260.1 11 Arabidopsis thaliana 3E-138 234 80 90 22 (14) _
AT1G06960.4 11 Arabidopsis thaliana 2E-105 147 100 100 0 (0) _
Os03g18720.1 7 Oryza sativa 1E-103 236 66 80 11 (11) _
Os03g18720.2 7 Oryza sativa 5E-103 235 67 80 11 (11) _
Os05g06280.1 7 Oryza sativa 8E-79 234 55 73 25 (25) M
GRMZM2G007590_P01 3.21 Zea mays 6E-103 234 66 80 6 (6) _
Zm00001eb396670_P002 agpv5 Zea mays 6E-103 234 66 80 0 (0) _
v1_GRMZM2G007590_P01 4a53 Zea mays 6E-103 234 66 80 18 (18) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF4523(2) RRM_1(2) RRM_5(2) RRM_occluded(2) RRM_Rrp7(2) SART-1(1)
TargetP:	Cytoplasm (Class 1 C0.115; M0.056; S0.058; _0.932)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	229 aa (-cTP 166)
Molecular Weight	26.22 kDA(-cTP )
PI	9.25(-cTP )

Experimental Evidence

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* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data