PPDB

 The Plant Proteome Database

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AT1G06820.1   carotenoid isomerase
Lab Annot. carotenoid isomerase CRTISO
Mapman: 16.1.4 secondary metabolism.isoprenoids.carotenoids
Curated Location plastid (Pubmed: 23198870 18431481 )

TAIR curated location: chloroplast
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G06820.3 11Arabidopsis thaliana05721001000 (0)_
AT1G06820.2 11Arabidopsis thaliana04991001000 (0)_
AT1G06820.4 11Arabidopsis thaliana046698980 (0)S
Os11g36440.1 7Oryza sativa050484925 (5)M
Os03g62510.1 7Oryza sativa2E-60527304816 (16)C
Os03g62510.2 7Oryza sativa7E-5251729470 (0)C
Zm00001eb114270_P006 agpv5Zea mays048177850 (0)_
Zm00001eb114270_P001 agpv5Zea mays030682910 (0)_
Zm00001eb200170_P003 agpv5Zea mays030881910 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Amino_oxidase(1) DAO(1) FAD_binding_2(3) FAD_oxidored(1) GDI(2) GIDA(2) GMC_oxre
TargetP: Cytoplasm (Class 3 C0.191; M0.073; S0.039; _0.604)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 595 aa (-cTP 533)
Molecular Weight 65.43 kDA(-cTP )
PI 8.33(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1126Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1626Detail       Rosettes [A. thaliana] k1xk3
1675Detail       Rosettes [A. thaliana]  
1744Detail        [A. thaliana] Mep-6
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2317Detail       leaf [A. thaliana] PG plastoglobule 
2319Detail       leaf [A. thaliana] PG plastoglobule 
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 20061580(chloroplast envelope (inner+outer))
21311031(chloroplasts)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help