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PPDB	The Plant Proteome Database

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AT1G06820.1 carotenoid isomerase

Lab Annot.

carotenoid isomerase CRTISO
Mapman: 16.1.4 secondary metabolism.isoprenoids.carotenoids

Curated Location

plastid (Pubmed: 23198870 18431481 )

TAIR curated location: chloroplast

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G06820.3 11 Arabidopsis thaliana 0 572 100 100 0 (0) _
AT1G06820.2 11 Arabidopsis thaliana 0 499 100 100 0 (0) _
AT1G06820.4 11 Arabidopsis thaliana 0 466 98 98 0 (0) S
Os11g36440.1 7 Oryza sativa 0 504 84 92 5 (5) M
Os03g62510.1 7 Oryza sativa 2E-60 527 30 48 16 (16) C
Os03g62510.2 7 Oryza sativa 7E-52 517 29 47 0 (0) C
Zm00001eb114270_P006 agpv5 Zea mays 0 481 77 85 0 (0) _
Zm00001eb114270_P001 agpv5 Zea mays 0 306 82 91 0 (0) _
Zm00001eb200170_P003 agpv5 Zea mays 0 308 81 91 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Amino_oxidase(1) DAO(1) FAD_binding_2(3) FAD_oxidored(1) GDI(2) GIDA(2) GMC_oxre
TargetP:	Cytoplasm (Class 3 C0.191; M0.073; S0.039; _0.604)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	595 aa (-cTP 533)
Molecular Weight	65.43 kDA(-cTP )
PI	8.33(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1126	Detail								leaf [A. thaliana]	chloroplast plastoglobule	k2k3
1396	Detail								leaf [A. thaliana]	total leaf tissue	clpt1xclpt2 (rep. 2)
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1402	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1403	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1404	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
1626	Detail								Rosettes [A. thaliana]		k1xk3
1675	Detail								Rosettes [A. thaliana]
1744	Detail								[A. thaliana]		Mep-6
1766	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1
1828	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Col-0 Fluctuating light
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2018	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2020	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

20061580(chloroplast envelope (inner+outer))
21311031(chloroplasts)

Comparative Proteomics Data