PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G06650.1   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Lab Annot. 2-oxoglutarate-dependent dioxygenase
Mapman: 21.2 redox.ascorbate and glutathione
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G06650.2 11Arabidopsis thaliana0286999929 (22)_
AT1G06640.2 11Arabidopsis thaliana5E-17928583890 (0)_
AT1G06640.1 11Arabidopsis thaliana1E-17828682890 (0)_
Os03g48430.1 7Oryza sativa1E-9228149642 (2)_
Os08g30210.1 7Oryza sativa7E-8628247630 (0)_
Os08g30080.1 7Oryza sativa1E-8328246626 (6)_
GRMZM2G119116_P01 3.21Zea mays2E-9229247610 (0)_
v1_GRMZM2G119116_P01 4a53Zea mays2E-9229247610 (0)_
GRMZM2G119116_P02 3.21Zea mays2E-9229247610 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: 2OG-FeII_Oxy(1) DIOX_N(1)
TargetP: Cytoplasm (Class 2 C0.153; M0.075; S0.091; _0.873)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 314 aa (-cTP 267)
Molecular Weight 35.73 kDA(-cTP )
PI 5.67(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1449Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 2)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1875Detail       Total leaf [A. thaliana] total soluble wild-type
1876Detail       Total leaf [A. thaliana] total soluble wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help