PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G06310.1   acyl-CoA oxidase 6
Lab Annot. acyl-CoA oxidase 6
Mapman: 11.9.4.2 lipid metabolism.lipid degradation.beta-oxidation.acyl CoA DH
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G06290.1 11Arabidopsis thaliana06758894179 (73)M
AT5G65110.1 11Arabidopsis thaliana1E-108617375239 (27)_
AT5G65110.2 11Arabidopsis thaliana3E-106580385227 (21)_
Os06g24704.1 7Oryza sativa064765810 (0)M
Os11g39220.1 7Oryza sativa3E-110622365317 (17)_
Os11g39220.2 7Oryza sativa1E-94507375317 (17)_
Zm00001eb148110_P001 agpv5Zea mays064963780 (0)M
GRMZM2G014136_P01 3.21Zea mays064963787 (7)M
v1_GRMZM2G014136_P01 4a53Zea mays064963783 (3)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ACOX(1) Acyl-CoA_dh_1(1) Acyl-CoA_dh_M(1) Acyl-CoA_ox_N(1)
TargetP: Mitochondria (Class 5 C0.315; M0.434; S0.052; _0.150)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 675 aa (-cTP 662)
Molecular Weight 75.90 kDA(-cTP )
PI 7.93(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1445Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 1)
1449Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

 18931141(peroxisomes- high&low purity (cell culture))
21311031(mitochondria)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help