PPDB

 The Plant Proteome Database

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AT1G06220.1   Ribosomal protein S5/Elongation factor G/III/V family protein
Lab Annot. translation elongation factor (MEE5)
Mapman: 29.2.4 protein.synthesis.elongation
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G06220.2 11Arabidopsis thaliana098710010056 (37)_
AT1G06220.3 11Arabidopsis thaliana09871001000 (0)_
AT5G25230.1 11Arabidopsis thaliana0990949620 (16)_
Os06g40600.1 7Oryza sativa0926809035 (35)_
Os04g02820.1 7Oryza sativa08553858127 (127)_
Os04g02820.2 7Oryza sativa08553858127 (127)_
Zm00001eb386630_P001 agpv5Zea mays099577860 (0)_
v1_GRMZM2G316232_P01 4a53Zea mays0536677732 (32)_
GRMZM2G316232_P01 3.21Zea mays0536677719 (14)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: EFG_C(1) EFG_III(1) EFG_IV(1) EFTUD2(1) GTP_EFTU(1) GTP_EFTU_D2(1) MMR_HSR1(1) R
TargetP: Cytoplasm (Class 2 C0.134; M0.122; S0.134; _0.861)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 987 aa (-cTP 969)
Molecular Weight 110.44 kDA(-cTP )
PI 5.05(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1423Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1424Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 1)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1507Detail        [A. thaliana] wild-type
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1535Detail       leaf [A. thaliana] wild-type
1618Detail        [A. thaliana] m48
1757Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1758Detail       leaf [A. thaliana] total leaf tissue DXS_Flag+fosmidomycin
1930Detail       leaf [A. thaliana] total leaf tissue Col_0 Wild-type
1931Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2237Detail       seedlings [A. thaliana] total tissue gfs9
2238Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2254Detail       leaf [A. thaliana] total seedlings gfs9
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2312Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 16287169(Cell Wall proteome)
17317660(Plasma Membrane proteome)
18463617(suspension cells-phosphorylated proteins)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
20706207(contaminants cell cycle interactome (cell culture))
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help