PPDB

 The Plant Proteome Database

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AT1G06150.1   basic helix loop helix (bHLH) DNA-binding superfamily protein
Lab Annot. basic helix-loop-helix (bHLH) DNA-binding
Mapman: 27.3.6 RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G06150.2 11Arabidopsis thaliana073699991 (1)_
AT2G31280.1 11Arabidopsis thaliana073663750 (0)_
AT2G31280.3 11Arabidopsis thaliana075362740 (0)_
Os11g06010.1 7Oryza sativa3E-5935840570 (0)_
Os01g64560.1 7Oryza sativa3E-5621251660 (0)M
Os01g64560.2 7Oryza sativa3E-5621251660 (0)M
Zm00001eb202130_P002 agpv5Zea mays7E-5737437570 (0)_
v1_GRMZM2G158281_P01 4a53Zea mays7E-5737437570 (0)_
GRMZM2G158281_P01 3.21Zea mays7E-5737437570 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: bHLH-MYC_N(1) GerPE(1) HLH(1)
TargetP: Cytoplasm (Class 5 C0.062; M0.516; S0.051; _0.557)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 734 aa (-cTP 721)
Molecular Weight 81.01 kDA(-cTP )
PI 5.72(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2272Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 18436743(specific to roots)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help