PPDB

 The Plant Proteome Database

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AT1G05940.1   cationic amino acid transporter 9
Lab Annot. cationic amino acid transmembrane transporter (CAT9)
Mapman: 34.3 transport.amino acids
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G05940.3 11Arabidopsis thaliana052899990 (0)C
AT1G05940.4 11Arabidopsis thaliana049699990 (0)C
AT1G05940.2 11Arabidopsis thaliana04511001000 (0)S
Os02g43860.1 7Oryza sativa056069820 (0)C
Os02g43860.2 7Oryza sativa049370830 (0)C
Os10g30090.1 7Oryza sativa3E-9256634540 (0)M
Zm00001eb249380_P001 agpv5Zea mays055866810 (0)C
v1_GRMZM2G139920_P01 4a53Zea mays055866810 (0)C
GRMZM2G139920_P01 3.21Zea mays055866810 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AA_permease(1) AA_permease_2(2) AA_permease_C(2) AveC_like(3) Rab5ip(1) Spore_pe
TargetP: Chloroplast (Class 5 C0.729; M0.614; S0.008; _0.012)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 14 TMs
Aramemnon: 15 TMs
TAT position:
Length 569 aa (-cTP 528)
Molecular Weight 60.18 kDA(-cTP 55.72)
PI 7.55(-cTP 6.30)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1345Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1614Detail       Natural Senescence leaf [A. thaliana]  
1615Detail       Natural Senescence leaf [A. thaliana]  
1616Detail       Natural Senescence leaf [A. thaliana]  
1618Detail        [A. thaliana] m48
1619Detail        [A. thaliana] m48
1620Detail        [A. thaliana] m48
1621Detail        [A. thaliana] m48
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

 17151019(vacuole - suspension cell)
19525416(leaf (wt and clpr4-1 mutant))
21988472(vacuole (unfiltered data))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help