PPDB

PPDB	The Plant Proteome Database

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AT1G05660.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G05650.1 11 Arabidopsis thaliana 0 394 89 94 0 (0) S
AT2G43890.1 11 Arabidopsis thaliana 0 390 62 76 4 (4) S
AT2G43880.1 11 Arabidopsis thaliana 7E-155 365 57 75 0 (0) S
Os01g43490.1 7 Oryza sativa 1E-138 396 48 68 0 (0) S
Os01g66710.1 7 Oryza sativa 4E-115 392 45 63 0 (0) S
Os11g14410.1 7 Oryza sativa 1E-99 333 45 64 0 (0) S
Zm00001eb145110_P001 agpv5 Zea mays 2E-125 399 45 64 0 (0) S
GRMZM2G026855_P01 3.21 Zea mays 2E-125 399 45 64 0 (0) S
v1_GRMZM2G026855_P01 4a53 Zea mays 2E-125 399 45 64 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(2) Glyco_hydro_28(1) PcF(1) Pectate_lyase_3(2) Pectate_lyase_4(2)
TargetP:	Secreted (Class 1 C0.009; M0.012; S0.984; _0.030)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	394 aa (-cTP 337)
Molecular Weight	41.85 kDA(-cTP )
PI	9.33(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data