PPDB

PPDB	The Plant Proteome Database

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AT1G05520.1 Sec23/Sec24 protein transport family protein

Lab Annot.

transport protein, putative
Mapman: 29.3.4.2 protein.targeting.secretory pathway.golgi

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G23660.1 11 Arabidopsis thaliana 0 787 79 88 14 (0) _
AT3G23660.2 11 Arabidopsis thaliana 0 813 76 85 11 (0) _
AT4G14160.2 11 Arabidopsis thaliana 0 789 78 86 103 (42) _
Os11g24560.1 7 Oryza sativa 0 779 69 81 36 (36) C
Os08g36994.1 7 Oryza sativa 0 783 60 75 1 (1) _
Os09g28610.1 7 Oryza sativa 0 783 60 74 0 (0) _
Zm00001eb169310_P001 agpv5 Zea mays 0 782 69 80 0 (0) C
v1_GRMZM2G045987_P01 4a53 Zea mays 0 782 69 80 20 (19) C
GRMZM2G045987_P01 3.21 Zea mays 0 782 69 80 36 (32) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Gelsolin(1) Sec23_BS(1) Sec23_helical(1) Sec23_trunk(1) Vps36-NZF-N(1) zf-Sec23_
TargetP:	Cytoplasm (Class 1 C0.076; M0.100; S0.038; _0.952)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	783 aa (-cTP 779)
Molecular Weight	86.36 kDA(-cTP )
PI	5.41(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1423	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 3)
1424	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 1)
2008	Detail								leaf [A. thaliana]	RNAi PG plastoglobule	RNAi
2254	Detail								leaf [A. thaliana]	total seedlings	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data