PPDB

The Plant Proteome Database

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AT1G05500.1   Calcium-dependent lipid-binding (CaLB domain) family protein

Lab Annot. ATSYTE/NTMC2T2.1/NTMC2TYPE2.1/SYTE
Mapman: 35.1.19 not assigned.no ontology.C2 domain-containing protein
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G05500.2 11Arabidopsis thaliana04161001000 (0)_
AT5G11100.1 11Arabidopsis thaliana056869840 (0)S
AT3G61050.1 11Arabidopsis thaliana6E-98394426442 (30)M
Os04g55220.1 7Oryza sativa057070850 (0)M
Os08g20544.1 7Oryza sativa042069850 (0)_
Os07g22640.1 7Oryza sativa5E-94396396616 (16)M
Zm00001eb068630_P001 agpv5Zea mays056770850 (0)M
v1_GRMZM2G071163_P01 4a53Zea mays056770850 (0)M
GRMZM2G071163_P01 3.21Zea mays056770850 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: C2(2) SMP_LBD(1) WGG(3)
TargetP: Secreted (Class 3 C0.077; M0.074; S0.700; _0.138)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 560 aa (-cTP 520)
Molecular Weight 62.93 kDA(-cTP )
PI 5.62(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

16618929(UNKNOWN-LOPIT-callus)
17317660(Plasma Membrane proteome)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19106119(plasma membrane detergent resistent microdomains (DRM))
19114538(guard cells Arabidopsis leaf)
21533090(plasmodesmata-crude)
21173025(root proteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data


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