PPDB

The Plant Proteome Database

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AT1G05385.1   photosystem II 11 kDa protein-like protein

Lab Annot. Psb27 homologue LPA19
Mapman: 29.8 protein.protein assembly and cofactor ligation
Curated Location thylakoid-peripheral-lumenal-side (Pubmed: 23198870 20444695 ) (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G05385.2 11Arabidopsis thaliana3E-1021451001000 (0)_
Os03g53640.1 7Oryza sativa6E-5112069816 (6)C
Zm00001eb214960_P001 agpv5Zea mays2E-5412668840 (0)C
v1_GRMZM2G087435_P01 4a53Zea mays2E-54126688411 (11)C
GRMZM2G087435_P01 3.21Zea mays2E-54126688414 (14)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF5420(1) PSII_Pbs27(1)
TargetP: Chloroplast (Class 5 C0.418; M0.144; S0.046; _0.237)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position: 41
Length 199 aa (-cTP 135) (-lTP 132)
Molecular Weight 22.27 kDA(-cTP 15.12)(-lTP 14.85)
PI 8.43(-cTP 5.44)(-lTP 5.993)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
875Detail       leaf [A. thaliana] chloroplast stromawild-type
1870Detail       Total leaf [A. thaliana] Stroma wild-type
1875Detail       Total leaf [A. thaliana] total soluble wild-type
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
1944Detail       leaf [A. thaliana] stroma UVR stromaUVR
1945Detail       leaf [A. thaliana] stroma UVR stromaUVR
1946Detail       leaf [A. thaliana] stroma UVR stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1949Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2075Detail       Total leaf [A. thaliana] total soluble wt & clpt1xclpt2
2078Detail       Total leaf [A. thaliana] total soluble wt & clpt1xclpt2
2079Detail       Total leaf [A. thaliana] total soluble wt & clpt1xclpt2
2084Detail       Total leaf [A. thaliana] total soluble wt & clpt1xclpt2
2141Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2142Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2144Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2146Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2149Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2150Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2151Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2308Detail       leaf [A. thaliana] PG plastoglobule 
2311Detail       leaf [A. thaliana] PG plastoglobule 
2316Detail       leaf [A. thaliana] PG plastoglobule 
2317Detail       leaf [A. thaliana] PG plastoglobule 
2318Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data


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