PPDB

The Plant Proteome Database

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AT1G05260.1   Peroxidase superfamily protein

Lab Annot. AtPrx03 (RCI3, RARE COLD INDUCIBLE 3)
Mapman: 20.2.2 stress.abiotic.cold
Curated Location cell wall
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G21770.1 11Arabidopsis thaliana5E-17631274839 (9)S
AT4G11290.1 11Arabidopsis thaliana1E-16532369805 (5)S
AT5G15180.1 11Arabidopsis thaliana1E-11631852681 (1)S
Os06g46799.1 7Oryza sativa1E-13430459750 (0)S
Os11g43980.1 7Oryza sativa5E-12331155720 (0)S
Os06g20150.1 7Oryza sativa2E-12130454710 (0)S
Zm00001eb225230_P002 agpv5Zea mays9E-13530761750 (0)S
Zm00001eb225230_P001 agpv5Zea mays9E-13530761750 (0)S
v1_GRMZM2G085967_P01 4a53Zea mays9E-135307617523 (23)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: peroxidase(1)
TargetP: Secreted (Class 1 C0.009; M0.007; S0.982; _0.033)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 326 aa (-cTP 280)
Molecular Weight 34.91 kDA(-cTP )
PI 8.74(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

17407188(cotyledon)
WallDB-E.Jamet(cell wall reference proteome)
21173025(root proteome)
21413152(Xylem-sap (BrassicaOleracea))
21109274(cellwall-glycoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help